Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs202041844 chr1:40682172 AAGAG/A 5.98E-9 399 14.67 12.62 3.13 KM Plot
STAD rs202086207 chr12:124783957 T/G 2.26E-5 393 14.97 13.92 9.18 KM Plot
STAD rs2026429 chr1:197079671 A/C 1.27E-8 406 14.07 17.43 5.8 KM Plot
STAD rs2049364 chr3:97038428 C/T 2.17E-8 399 14.2 18.17 3.25 KM Plot
STAD rs2090009 chr1:227313362 G/A 0 405 14.37 14.15 1.48 KM Plot
STAD rs216405 chr17:28908743 G/T 1.34E-5 400 9.8 16.67 14.22 KM Plot
STAD rs216406 chr17:28908718 T/C 1.36E-5 401 9.8 16.88 14.22 KM Plot
STAD rs216409 chr17:28906269 C/T 1.71E-5 403 9.8 16.35 14.22 KM Plot
STAD rs216420 chr17:28938508 C/T 1.96E-5 401 14.13 16.6 9.8 KM Plot
STAD rs216424 chr17:28943064 T/G 1.28E-7 397 14.22 16.35 6.27 KM Plot
STAD rs216433 chr17:28921860 T/C 1.66E-5 403 14.2 16.53 9.8 KM Plot
STAD rs216435 chr17:28922737 G/T 1.66E-5 403 14.2 16.53 9.8 KM Plot
STAD rs216438 chr17:28924585 C/T 1.66E-5 403 14.2 16.53 9.8 KM Plot
STAD rs216444 chr17:28933100 T/G 1.95E-5 403 14.2 16.53 9.8 KM Plot
STAD rs2166866 chr2:46370990 C/G 1.17E-7 401 2.03 15.65 14.32 KM Plot